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30 Best Accounting, Bookkeeping, Invoicing and Tax Software for Ecommerce

Accounting Software is an essential part of keeping your invoicing, payments, and your bottom line in check for your online store. Below are some of the best accounting software for small to medium size eCommerce businesses. The apps listed below are available either as a desktop or a cloud-based web app.

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Freshbooks

Freshbooks

Freshbooks is an all-in-one, cloud-based accounting, and invoicing solution for small businesses with the ability to automate invoice reminders and payment collections. Their well-designed invoices can be generated in seconds and will make your business look more professional. With the FreshBooks mobile app, you can monitor your expenses, send invoices, and receive payments, no matter where you are in the world

Quickbooks

Quickbooks

If you’re a small or medium-sized online business, then Quickbooks is a very good choice for a reliable and efficient accounting software. There are local and cloud-based versions available, both offering inventory, taxes, and expenses tracking, reporting, and many more features that support eCommerce businesses. Native integrations are available for the most popular eCommerce platforms such as Shopify and BigCommerce.

Webgility

Webgility

Webgility is an eCommerce accounting automation program that allows you to automate accounting and operations for multi-channel commerce. Webgility allows you to automatically post, track, and sync all orders, expenses, fees, and shipping costs directly into QuickBooks Online or Enterprise. It also allows you to record each order individually or summarized by day, week, month, or settlement period with journal entries.

Xero

Xero

Xero is a cloud-based accounting software that is perfect for small to medium-sized businesses that need to connect to accountants, bookkeepers, and banks and keep an eye on their cash flow. Xero can be accessed from any device as long as you have an internet connection. Other Xero features include invoicing and payments, bank reconciliation, inventory and stock management, contact database and segmentation, and payroll.

Zarmoney

Zarmoney

Zarmoney describes their software on their website as a powerful yet simple Cloud Business Accounting Software. It handles a wide range of tasks from invoicing to managing bill payments, superior inventory visibility, online payments, seamless bank connections, quotes and estimates, purchase and sales orders, sales tax, bank reconciliations, role-based access systems, reporting. Best of all for eCommerce, it integrates with Shopify, Stripe, and Authorize.net

Wave acc

Wave

Wave is a versatile accounting and invoicing software option for small businesses that are just starting and looking to keep all setup costs to a minimum…. why?…. because it’s absolutely free! It’s cloud-based and is available for Windows and OS X and with Android and iOS apps for invoicing and receipts. Wave can do almost everything premium accounting software tools can do, including expense management, banking reconciliation, payroll, and invoicing.

MYOB

MYOB

MYOB is a popular accounting software is suitable for individual eCommerce store owners or any other size of business. Some basic features include tracking when clients receive and open your invoices, bills, and expenses management. Clients have the ability to use a credit card to pay your invoices directly. You can also link a bank account, manage your cash flow, and monitor all transaction movements with detailed job tracking and inventory.

Quaderno

Quaderno

Quaderno is for calculating sales tax, VAT, and GST. The software allows you to automate receipts as well. In a few clicks, you can connect your online store, payment processors, and shopping carts to Quaderno, meaning all your invoices and revenue sources will be in one easy-to-use dashboard. It also automatically tracks your sales vs. international tax thresholds and alerts you when you need to start charging tax in a new territory or country.

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